Improved Compression of DNA Sequencing Data with Cascading Bloom Filters

DOI10.1142/S0129054118430013zbMath1415.68065OpenAlexW2906727230WikidataQ128612277 ScholiaQ128612277MaRDI QIDQ5384618

Kamil Salikhov

Publication date: 24 June 2019

Published in: International Journal of Foundations of Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1142/s0129054118430013

zbMATH Keywords

next-generation sequencingcascading Bloom filterlossless reads compression

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Coding and information theory (compaction, compression, models of communication, encoding schemes, etc.) (aspects in computer science) (68P30) Data structures (68P05) Information storage and retrieval of data (68P20) Algorithms on strings (68W32)

Uses Software

• BEETL
• SCALCE
• Kpath
• SlimGene

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