SpliceTAPyR — An Efficient Method for Transcriptome Alignment

DOI10.1142/S0129054118430049zbMath1415.92140OpenAlexW2907075885WikidataQ128691619 ScholiaQ128691619MaRDI QIDQ5384621

Alexandre P. Francisco, Francisco E. jun. Fernandes, Andreia Sofia Teixeira

Publication date: 24 June 2019

Published in: International Journal of Foundations of Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1142/s0129054118430049

zbMATH Keywords

sequence alignmenttranscriptomenext-generation sequencingRNA-Seqsplice junctions

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Algorithms on strings (68W32)

Uses Software

• STAR
• TopHat
• MapSplice
• BWA

Cites Work

• Compressed representations of sequences and full-text indexes
• Suffix Arrays: A New Method for On-Line String Searches

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