Identifying Potential Regulatory Elements by Transcription Factor Binding Site Alignment Using Partial Order Graphs

DOI10.1142/S0129054118430074zbMath1416.92057OpenAlexW2906979530WikidataQ128681053 ScholiaQ128681053MaRDI QIDQ5384626

Greg Elgar, Maryam Abdollahyan, Fabrizio Smeraldi

Publication date: 24 June 2019

Published in: International Journal of Foundations of Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1142/s0129054118430074

zbMATH Keywords

dynamic programmingpartial order graphsregulatory element predictiontranscription factor binding site co-occurrence

Mathematics Subject Classification ID

Applications of graph theory (05C90) Dynamic programming (90C39) Biochemistry, molecular biology (92C40)

Uses Software

• FIMO
• UniPROBE

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