Spatial Calculus of Looping Sequences

DOI10.1016/j.entcs.2009.02.003zbMath1283.92024OpenAlexW3021848730MaRDI QIDQ5404072

Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini, Roberto Barbuti

Publication date: 21 March 2014

Published in: Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.entcs.2009.02.003

zbMATH Keywords

systems biologyspatial modelingcalculus of looping sequences

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Systems biology, networks (92C42)

Related Items

Foundational aspects of multiscale modeling of biological systems with process algebras ⋮ Spatial P systems ⋮ Translating Stochastic CLS into Maude ⋮ Bio-PEPAd: a non-Markovian extension of Bio-PEPA ⋮ Identification of components in biochemical pathways: extensive aqpplication to SBML models

Uses Software

• PRISM
• BioSPI
• MGS

Cites Work

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• A mathematical model for quorum sensing in \textit{Pseudomonas aeruginosa}
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• Membrane computing. An introduction.
• Formal molecular biology
• Modelling biochemical pathways through enhanced \(\pi\)-calculus
• BioAmbients: an abstraction for biological compartments
• MGS
• A Spatial Extension to the π Calculus
• Stochastic Bigraphs
• Computational Methods in Systems Biology
• A Core Calculus for a Comparative Analysis of Bio-inspired Calculi

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