Parametric analysis of alignment and phylogenetic uncertainty

DOI10.1007/s11538-010-9610-8zbMath1214.92057OpenAlexW1990698462WikidataQ46562479 ScholiaQ46562479MaRDI QIDQ542021

Peter Huggins, Anna-Sapfo Malaspinas, Nicholas Eriksson

Publication date: 8 June 2011

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-010-9610-8

zbMATH Keywords

polytopesmultiple alignmentparametric alignment

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Biochemistry, molecular biology (92C40)

Related Items (2)

Optimality regions and fluctuations for Bernoulli last passage models ⋮ Algebraic methods in mathematical biology

Uses Software

• polymake
• iB4e
• ClustalW
• Bali-phy

Cites Work

• Unnamed Item
• Unnamed Item
• Parametric multiple sequence alignment and phylogeny construction
• Lower bounds for optimal alignments of binary sequences
• The convex hull of the integer points in a large ball
• Parametric optimization of sequence alignment
• Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
• Toward the human genotope
• Comparison of alignment free string distances for complete genome phylogeny
• The Multiple Sequence Alignment Problem in Biology
• Minimal Mutation Trees of Sequences
• Lectures on Polytopes
• Parametric inference for biological sequence analysis
• Algebraic Statistics for Computational Biology
• iB4e: A Software Framework for Parametrizing Specialized LP Problems

This page was built for publication: Parametric analysis of alignment and phylogenetic uncertainty