Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes

DOI10.1007/978-3-319-89929-9_15OpenAlexW2802362984MaRDI QIDQ5881362

Unnamed Author, Unnamed Author, Unnamed Author, Unnamed Author, Christopher Quince

Publication date: 9 March 2023

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-89929-9_15

zbMATH Keywords

core genomemetagenomic readsmetagenomic samplesspecies-level assignmenttaxonomic binning

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04) Microbiology (92C70)

Related Items (1)

SPARSE

Uses Software

• Mash
• Bowtie 2
• Kraken
• DESMAN
• Taxator-tk
• MALT
• Sigma
• MetaPhlAn
• panX

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