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Efficient algorithms for local alignment search

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Publication:5935741
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DOI10.1023/A:1009893719470zbMath1028.92009OpenAlexW2084175832MaRDI QIDQ5935741

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Publication date: 7 January 2004

Published in: Journal of Combinatorial Optimization (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1023/a:1009893719470


zbMATH Keywords

parallel computingDNA sequencesprotein sequencesbiological sequencesBLASTlocal alignment research


Mathematics Subject Classification ID

Search theory (90B40) Biochemistry, molecular biology (92C40) Numerical methods for discrete and fast Fourier transforms (65T50) Parallel numerical computation (65Y05)


Related Items

DCA based algorithms for multiple sequence alignment (MSA) ⋮ Mathematical programming strategies for solving the minimum common string partition problem ⋮ New formulations of the multiple sequence alignment problem ⋮ DC Programming and DCA for Challenging Problems in Bioinformatics and Computational Biology




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