Classifying RNA pseudoknotted structures

DOI10.1016/j.tcs.2004.03.042zbMath1043.92008OpenAlexW2013195357MaRDI QIDQ596125

Anne Condon, Baharak Rastegari, Shelly Zhao, Beth Davy, Finbarr Tarrant

Publication date: 10 August 2004

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://eprints.soton.ac.uk/426392/1/1_s2.0_S0304397504001938_main.pdf

zbMATH Keywords

RNA secondary structureClassification of structuresPseudoknots

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Biophysics (92C05) Computational methods for problems pertaining to biology (92-08)

Related Items (6)

Properties of RNA secondary structure matching models ⋮ Algebraic dynamic programming for multiple context-free grammars ⋮ Posets and Spaces of $k$-Noncrossing RNA Structures ⋮ A graphical criterion of planarity for RNA secondary structures with pseudoknots in Rivas-Eddy class ⋮ Fatgraph models of RNA structure ⋮ A grammatical approach to RNA-RNA interaction prediction

Cites Work

• Tree adjoining grammars for RNA structure prediction
• Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots

This page was built for publication: Classifying RNA pseudoknotted structures