Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method

DOI10.1016/S0166-218X(96)00068-6zbMath0868.92019WikidataQ37445807 ScholiaQ37445807MaRDI QIDQ5961629

Thomas D. Schneider, David N. Mastronarde

Publication date: 4 August 1997

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: http://www.elsevier.com/locate/dam

zbMATH Keywords

fast algorithmDNA binding sequencesFis proteinshill-climbing algorithminformation contentmultiple alignmentOxyR proteins

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Communication, information (94A99) Computational methods for problems pertaining to biology (92-08)

Related Items (3)

An improved scoring matrix for multiple sequence alignment ⋮ An error-correcting code framework for genetic sequence analysis ⋮ Shannon information theory and molecular biology

Cites Work

• A Mathematical Theory of Communication
• A survey of multiple sequence comparison methods
• A multiple sequence comparison method
• Pascal. User manual and report. 2nd ed
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