A hidden Markov model for investigating recent positive selection through haplotype structure

DOI10.1016/j.tpb.2014.11.001zbMath1331.92108OpenAlexW2341064717WikidataQ34778939 ScholiaQ34778939MaRDI QIDQ5964831

Hua Chen, Montgomery Slatkin, Jody Hey

Publication date: 1 March 2016

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc4277924

zbMATH Keywords

hidden Markov modelallele agehaplotype structurerecent positive selectionselection intensity

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10)

Related Items (1)

Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics

Uses Software

• SABER
• MSMS

Cites Work

• Unnamed Item
• Approximating selective sweeps
• Asymptotic line-of-descent distributions
• The effect of strongly selected substitutions on neutral polymorphism: Analytical results based on diffusion theory
• Simulating probability distributions in the coalescent
• The joint allele frequency spectrum of multiple populations: a coalescent theory approach
• The sampling theory of selectively neutral alleles
• Biological Sequence Analysis

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