Differential geometry based solvation model. I: Eulerian formulation
DOI10.1016/j.jcp.2010.06.036zbMath1229.92030OpenAlexW2103860533WikidataQ34183931 ScholiaQ34183931MaRDI QIDQ602920
Nathan A. Baker, Guo-Wei Wei, Zhan Chen
Publication date: 5 November 2010
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc2951687
multiscale modelssolvation free energybiomolecular surface formation and evolutiongeneralized Poisson-Boltzmann equationpotential driving geometric flows
Biochemistry, molecular biology (92C40) Biophysics (92C05) Applications of global differential geometry to the sciences (53C80) Applications of local differential geometry to the sciences (53B50)
Related Items (28)
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Nonlinear total variation based noise removal algorithms
- A numerical method for computing minimal surfaces in arbitrary dimension
- Differential geometry based multiscale models
- Geometric and potential driving formation and evolution of biomolecular surfaces
- On the fictitious-domain and interpolation formulations of the matched interface and boundary (MIB) method
- Matched interface and boundary (MIB) method for elliptic problems with sharp-edged interfaces
- Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation
- Geodesic active contours
- Semi-implicit level set methods for curvature and surface diffusion motion
- Subjective surfaces: A geometric model for boundary completion
- 3D curves reconstruction based on deformable models
- High-order FDTD methods via derivative matching for Maxwell's equations with material interfaces
- Computing minimal surfaces via level set curvature flow
- Three-dimensional matched interface and boundary (MIB) method for treating geometric singularities
- High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources
- Quality meshing of implicit solvation models of biomolecular structures
- Optimal approximations by piecewise smooth functions and associated variational problems
- Feature-Oriented Image Enhancement Using Shock Filters
- Curvature Measures
- Computational methods for optical molecular imaging
- Analysis of a fully discrete finite element method for the phase field model and approximation of its sharp interface limits
- ISIM: A Program for Grand Canonical Monte Carlo Simulations of the Ionic Environment of Biomolecules
- A general framework for low level vision
- A direct method for solving an anisotropic mean curvature flow of plane curves with an external force
- Level set methods: An overview and some recent results
- Evolution, implementation, and application of level set and fast marching methods for advancing fronts
This page was built for publication: Differential geometry based solvation model. I: Eulerian formulation