Spectrum preserving tilings enable sparse and modular reference indexing

DOI10.1007/978-3-031-29119-7_2zbMath1530.92166OpenAlexW4362499537MaRDI QIDQ6070703

R. Patro, Jamshed Khan, Jason Fan, Giulio Ermanno Pibiri

Publication date: 24 November 2023

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-031-29119-7_2

zbMATH Keywords

minimal perfect hashingpufferfish2reference indexingspectrum preserving tilings

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

Cites Work

• Succinct de Bruijn Graphs
• Representation of $$k$$-mer Sets Using Spectrum-Preserving String Sets
• Unnamed Item

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