Counting infinitely by oritatami co-transcriptional folding

DOI10.1007/s11047-021-09842-6zbMath1530.68101OpenAlexW4246657248MaRDI QIDQ6095499

Kohei Maruyama, Shinnosuke Seki

Publication date: 8 September 2023

Published in: Natural Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11047-021-09842-6

zbMATH Keywords

countingoritatami systemRNA cotranscriptional foldingtheory of algorithmic molecular self-assembly

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Biologically inspired models of computation (DNA computing, membrane computing, etc.) (68Q07)

Cites Work

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• Rule set design problems for oritatami systems
• Computability and complexity in self-assembly
• Towards the algorithmic molecular self-assembly of fractals by cotranscriptional folding
• Know when to fold 'em: self-assembly of shapes by folding in oritatami
• Construction of geometric structure by oritatami system
• Simple intrinsic simulation of cellular automata in oritatami molecular folding model
• The program-size complexity of self-assembled squares (extended abstract)
• Running time and program size for self-assembled squares
• Ruleset optimization on isomorphic oritatami systems

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