Phylogenomic Models from Tree Symmetries

DOI10.1137/23m1558872arXiv2303.07383MaRDI QIDQ6121606

Elizabeth S. Allman, Colby Long, John A. Rhodes

Publication date: 27 February 2024

Published in: SIAM Journal on Applied Algebra and Geometry (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2303.07383

zbMATH Keywords

multispecies coalescentphylogenetic invariantsflattening matrixgeneric identifiabilitySVDquartets

Mathematics Subject Classification ID

Problems related to evolution (92D15)

Cites Work

• Unnamed Item
• Hypothesis tests for phylogenetic quartets, with applications to coalescent-based species tree inference
• Phylogenetic invariants for the general Markov model of sequence mutation
• Identifiability and reconstructibility of species phylogenies under a modified coalescent
• Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
• Species Tree Inference from Genomic Sequences Using the Log-Det Distance

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