Space-Efficient Representation of Genomic k-Mer Count Tables

DOI10.4230/LIPICS.WABI.2021.8zbMath1519.92173OpenAlexW4391336158MaRDI QIDQ6133870

Unnamed Author, Gregory Kucherov, Djamal Belazzougui

Publication date: 24 July 2023

Full work available at URL: https://hal.science/hal-03447152

zbMATH Keywords

minimizerscompressiondata structuresBloom filterempirical entropy\(k\)-mer countingcompressed static function

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

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