A study on the covalent geometry of proteins and its impact on distance geometry

DOI10.1007/978-3-031-38299-4_54OpenAlexW4385435085MaRDI QIDQ6179049

Fabien Pascale, Thérèse E. Malliavin, Mathieu Merabti, Simon B. Hengeveld

Publication date: 16 January 2024

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-031-38299-4_54

zbMATH Keywords

protein structure determinationdistance geometry problemlocal optimisationinterval branch-and-prunecovalent geometry

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

• Discretization orders and efficient computation of Cartesian coordinates for distance geometry
• The discretizable molecular distance geometry problem
• Clifford algebra and the discretizable molecular distance geometry problem
• Tuning interval branch-and-prune for protein structure determination
• The discretizable distance geometry problem
• Distance Geometry
• A Branch‐and‐Prune algorithm for the Molecular Distance Geometry Problem
• On the Exact Solution of the Distance Geometry with Interval Distances in Dimension 1
• Euclidean Distance Geometry and Applications
• MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems

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