3D genome reconstruction from partially phased Hi-C data

DOI10.1007/s11538-024-01263-7arXiv2301.11764MaRDI QIDQ6192541

Oskar Henriksson, Jan Draisma, Diego Cifuentes, Kaie Kubjas, Annachiara Korchmaros

Publication date: 11 March 2024

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2301.11764

zbMATH Keywords

diploid organismsnumerical algebraic geometryapplied algebraic geometryHi-C3D genome organization

Mathematics Subject Classification ID

Semidefinite programming (90C22) Real algebraic sets (14P05) Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10) Numerical algebraic geometry (65H14)

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