Detecting simultaneous variant intervals in aligned sequences

DOI10.1214/10-AOAS400zbMath1223.62166arXiv1108.3177MaRDI QIDQ641121

Nancy R. Zhang, Benjamin Yakir, David O. Siegmund

Publication date: 21 October 2011

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1108.3177

zbMATH Keywords

segmentationscan statisticschange-point detectionDNA copy number

Mathematics Subject Classification ID

Related Items (23)

Scan statistics for detecting a local change in variance for normal data with known variance ⋮ Exact tests for offline changepoint detection in multichannel binary and count data with application to networks ⋮ Scan statistics on Poisson random fields with applications in genomics ⋮ Multi-sensor slope change detection ⋮ A combined SR-CUSUM procedure for detecting common changes in panel data ⋮ Optimal detection of multi-sample aligned sparse signals ⋮ Collective Anomaly Detection in High-Dimensional Var Models ⋮ Author's Response ⋮ Change-point model on nonhomogeneous Poisson processes with application in copy number profiling by next-generation DNA sequencing ⋮ BayesProject: fast computation of a projection direction for multivariate changepoint detection ⋮ Sequential tests controlling generalized familywise error rates ⋮ Change-Points: From Sequential Detection to Biology and Back ⋮ Discussion on “Change-Points: From Sequential Detection to Biology and Back” by David Siegmund ⋮ Sequential multi-sensor change-point detection ⋮ A novel change-point approach for the detection of gas emission sources using remotely contained concentration data ⋮ On extremal index of max-stable random fields ⋮ Asymptotic distribution-free change-point detection based on interpoint distances for high-dimensional data ⋮ Sequential model selection-based segmentation to detect DNA copy number variation ⋮ Online multivariate changepoint detection with type I error control and constant time/memory updates per series ⋮ Testing randomness online ⋮ Multiple Testing with the Structure-Adaptive Benjamini–Hochberg Algorithm ⋮ Graph-based change-point detection ⋮ Higher criticism: \(p\)-values and criticism

Uses Software

• PennCNV

Cites Work

• The statistics of gene mapping
• A new representation for a renewal-theoretic constant appearing in asymptotic approximations of large deviations
• Tail probabilities for the null distribution of scanning statistics
• Self-organization and the dynamical nature of ventricular fibrillation
• Detecting simultaneous changepoints in multiple sequences
• Tail Approximations for Maxima of Random Fields by Likelihood Ratio Transformations
• Circular binary segmentation for the analysis of array-based DNA copy number data
• A Modified Bayes Information Criterion with Applications to the Analysis of Comparative Genomic Hybridization Data
• Error Distribution for Gene Expression Data

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