An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies

DOI10.1214/10-AOAS393zbMath1454.62350arXiv1108.3180MaRDI QIDQ641152

Jia Li, George C. Tseng

Publication date: 21 October 2011

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1108.3180

zbMATH Keywords

meta-analysisadaptively weighted statisticsgenomic study

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Parametric hypothesis testing (62F03)

Related Items (11)

Meta‐analysis based variable selection for gene expression data ⋮ Standardized Partial Sums and Products of p-Values ⋮ TFisher: a powerful truncation and weighting procedure for combining \(p\)-values ⋮ Hypothesis setting and order statistic for robust genomic meta-analysis ⋮ The Generalized Fisher's Combination and Accurate P-Value Calculation under Dependence ⋮ Distribution of weighted Lancaster’s statistic for combining independent or dependent P-values, with applications to human genetic studies ⋮ Compressed spectral screening for large-scale differential correlation analysis with application in selecting glioblastoma gene modules ⋮ Interactive martingale tests for the global null ⋮ Combining permutation tests to rank systemically important banks ⋮ Imputation of truncated \(p\)-values for meta-analysis methods and its genomic application ⋮ Modeling Between-Study Heterogeneity for Improved Replicability in Gene Signature Selection and Clinical Prediction

Uses Software

• Bioconductor
• RankProd

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• THE COMBINATION OF PROBABILITIES: AN APPLICATION OF ORTHONORMAL FUNCTIONS
• A systematic comparison of methods for combining \(p\)-values from independent tests
• Karl Pearson's meta-analysis revisited
• Significance analysis of microarrays applied to the ionizing radiation response
• Application of Biostatistics and Bioinformatics Tools to Identify Putative Transcription Factor-Gene Regulatory Network of Ankylosing Spondylitis and Sarcoidosis
• Multiparameter Hypothesis Testing and Acceptance Sampling
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Empirical Bayes Analysis of a Microarray Experiment
• A Direct Approach to False Discovery Rates
• Approximations for trimmed Fisher procedures in research synthesis
• Asymptotic Optimality of Fisher's Method of Combining Independent Tests
• Asymptotic Optimality of Fisher's Method of Combining Independent Tests II
• THE PROBABILITY INTEGRAL TRANSFORMATION FOR TESTING GOODNESS OF FIT AND COMBINING INDEPENDENT TESTS OF SIGNIFICANCE
• On a Heuristic Method of Test Construction and its use in Multivariate Analysis
• Combining Independent Tests of Significance
• Characterizations of Complete Classes of Tests of Some Multiparametric Hypotheses, with Applications to Likelihood Ratio Tests

This page was built for publication: An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies