Local protein threading by mixed integer programming

DOI10.1016/J.DAM.2010.05.024zbMath1227.92020OpenAlexW2094371114MaRDI QIDQ643007

Juan-Miguel Gracia

Publication date: 27 October 2011

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://hal.inria.fr/inria-00436335/file/RR-7122.pdf

zbMATH Keywords

combinatorial optimizationprotein structure alignment

Mathematics Subject Classification ID

Mixed integer programming (90C11) Biochemistry, molecular biology (92C40)

Related Items (1)

Algorithm engineering for optimal alignment of protein structure distance matrices

Uses Software

• CPLEX
• RAPTOR

Cites Work

• Lagrangian approaches for a class of matching problems in computational biology
• Protein Threading: From Mathematical Models to Parallel Implementations

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