WENDY: covariance dynamics based gene regulatory network inference

DOI10.1016/J.MBS.2024.109284MaRDI QIDQ6648448

Peng Zheng, Zikun Wang, Aleksandr Y. Aravkin, Yue Wang, Yu-Chen Cheng

Publication date: 4 December 2024

Published in: Mathematical Biosciences (Search for Journal in Brave)

zbMATH Keywords

mathematical modelinginferencegene regulatory network

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Cites Work

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• Sparse inverse covariance estimation with the graphical lasso
• Asymptotic behavior of a sequence of conditional probability distributions and the canonical ensemble
• Inference on the structure of gene regulatory networks
• Granger causality analysis of human cell-cycle gene expression profiles
• Stochastic limit-cycle oscillations of a nonlinear system under random perturbations
• Granger Causality in Multivariate Time Series Using a Time-Ordered Restricted Vector Autoregressive Model
• The Joint Graphical Lasso for Inverse Covariance Estimation Across Multiple Classes
• Potentials of continuous Markov processes and random perturbations
• Inference on autoregulation in gene expression with variance-to-mean ratio
• Harissa: stochastic simulation and inference of gene regulatory networks based on transcriptional bursting

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