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Comparative genomics with succinct colored de Bruijn graphs

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Publication:6658084
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DOI10.1007/s00236-024-00467-7MaRDI QIDQ6658084

Guilherme P. Telles, Lucas P. Ramos, Felipe A. Louza

Publication date: 8 January 2025

Published in: Acta Informatica (Search for Journal in Brave)





Mathematics Subject Classification ID

Theory of computing (68Qxx)


Cites Work

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  • Inducing enhanced suffix arrays for string collections
  • Comparison of phylogenetic trees
  • The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform
  • Space-efficient construction of compressed suffix trees
  • Distance measures for biological sequences: some recent approaches
  • Algorithms to compute the Burrows-Wheeler similarity distribution
  • An extension of the Burrows-Wheeler transform
  • Suffix Arrays: A New Method for On-Line String Searches
  • Clustering by Compression
  • Succinct de Bruijn Graphs
  • Synteny Paths for Assembly Graphs Comparison
  • Fully Functional Suffix Trees and Optimal Text Searching in BWT-Runs Bounded Space
  • Compressed text indexes
  • A theoretical and experimental analysis of BWT variants for string collections
  • Tables







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