A scalable parallelization of the gene duplication problem

DOI10.1016/j.jpdc.2009.09.010zbMath1233.68206OpenAlexW2019947476MaRDI QIDQ666045

Oliver Eulenstein, Wen-Chieh Chang, Srinivas Aluru, André Wehe

Publication date: 7 March 2012

Published in: Journal of Parallel and Distributed Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jpdc.2009.09.010

zbMATH Keywords

computational biologyphylogeneticssupertreesparallel applicationsgene duplications

Mathematics Subject Classification ID

Analysis of algorithms and problem complexity (68Q25) Parallel algorithms in computer science (68W10) Protein sequences, DNA sequences (92D20) Problem solving in the context of artificial intelligence (heuristics, search strategies, etc.) (68T20)

Uses Software

• Genetree
• RAxML
• Notung

Cites Work

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• On the computational complexity of the rooted subtree prune and regraft distance
• Reconstruction of large phylogenetic trees: a parallel approach
• Fast Algorithms for Finding Nearest Common Ancestors
• Comparative Genomics
• Subtree transfer operations and their induced metrics on evolutionary trees