ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations

DOI10.1016/j.cpc.2004.08.002zbMath1196.92001DBLPjournals/cphysics/BusaDHHHPPSW05OpenAlexW1997638778WikidataQ29396390 ScholiaQ29396390MaRDI QIDQ709683

Ming-Chya Wu, Edik Hayryan, Ján Buša, Chin-Kun Hu, Jaroslav Skřivánek, Imrich Pokorný, Ján Plavka, Shura Hayryan, Jozef Dzurina

Publication date: 18 October 2010

Published in: Computer Physics Communications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cpc.2004.08.002

zbMATH Keywords

proteinsstereographic projectionanalytical equationspercolation probability

Mathematics Subject Classification ID

Interacting random processes; statistical mechanics type models; percolation theory (60K35) Biochemistry, molecular biology (92C40) Biophysics (92C05) Computational methods for problems pertaining to biology (92-08) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (5)

CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins ⋮ An enhanced version of SMMP-open-source software package for simulation of proteins ⋮ Mathematical analysis and calculation of molecular surfaces ⋮ ARVO ⋮ Excluded-volume potential for rigid molecules endowed with C_2v symmetry

Uses Software

• SMMP

Cites Work

• [SMMP A modern package for simulation of proteins]
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