Context dependent models for discovery of transcription factor binding sites

DOI10.1016/J.STAMET.2005.09.007zbMath1248.92022OpenAlexW2036628212MaRDI QIDQ713683

Jun Xie, Chuancai Wang, Bruce A. Craig

Publication date: 19 October 2012

Published in: Statistical Methodology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.stamet.2005.09.007

zbMATH Keywords

Markov modelGibbs samplerconditional position dependent motif modelMarkov order determination

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Uses Software

• BioProspector
• TRANSFAC
• BioOptimizer

Cites Work

• Bayesian Models for Multiple Local Sequence Alignment and Gibbs Sampling Strategies
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem
• Discovery of Conserved Sequence Patterns Using a Stochastic Dictionary Model

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