Rewriting rule chains modeling DNA rearrangement pathways

DOI10.1016/j.tcs.2012.04.041zbMath1284.68314OpenAlexW1987839619MaRDI QIDQ714800

Masahico Saito, Angela Angeleska, Nataša Jonoska

Publication date: 11 October 2012

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2012.04.041

zbMATH Keywords

ciliatesassembly pathwaysDNA rearrangementrewriting rules

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Grammars and rewriting systems (68Q42)

Related Items (1)

Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax}

Cites Work

• DNA recombination through assembly graphs
• Gene assembly through cyclic graph decomposition
• Computation in living cells. Gene assembly in ciliates
• Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates
• RNA-guided DNA assembly
• CIRCULARITY AND OTHER INVARIANTS OF GENE ASSEMBLY IN CILIATES
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