Simple gene assembly as a rewriting of directed overlap-inclusion graphs

DOI10.1016/j.tcs.2012.04.018zbMath1402.92292OpenAlexW1988845392MaRDI QIDQ714803

Sepinoud Azimi, Ion Petre, Miika Langille, Tero J.Harju

Publication date: 11 October 2012

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2012.04.018

zbMATH Keywords

simple gene assemblydirected overlap inclusion graphsgraph-based simple operations

Mathematics Subject Classification ID

Applications of graph theory (05C90) Graph theory (including graph drawing) in computer science (68R10) Genetics and epigenetics (92D10)

Cites Work

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• Extended strings and graphs for simple gene assembly
• Combining overlap and containment for gene assembly in ciliates
• Patterns of simple gene assembly in ciliates
• Computation in living cells. Gene assembly in ciliates
• Directed Overlap-inclusion Graphs as Representations of Ciliate Genes
• A String-Based Model for Simple Gene Assembly

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