An efficient algorithm for generating the internal branches of a Kingman coalescent

DOI10.1016/j.tpb.2017.05.002zbMath1405.92207OpenAlexW2735248678WikidataQ47764683 ScholiaQ47764683MaRDI QIDQ725150

M. Reppell, Sebastian Zöllner

Publication date: 1 August 2018

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc5764821

zbMATH Keywords

coalescentcoalescent simulationsgenealogical topology

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Applications of branching processes (60J85) Population dynamics (general) (92D25) Genetics and epigenetics (92D10)

Related Items (1)

Editorial: Introduction to the Paul Joyce special issue

Uses Software

• FTEC

Cites Work

• On the external branches of coalescents with multiple collisions
• The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele
• Theory and applications of a deterministic approximation to the coalescent model
• Genealogy of neutral genes in two partially isolated populations
• A note on distributions of times to coalescence, under time-dependent population size
• The coalescent
• Statistical properties of segregating sites
• The internal branch lengths of the Kingman coalescent
• The neutral frequency spectrum of linked sites
• The mean and variance of the numbers of \(r\)-pronged nodes and \(r\)-caterpillars in Yule-generated genealogical trees
• The age of a mutation in a general coalescent tree

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