Hypothesis tests for phylogenetic quartets, with applications to coalescent-based species tree inference

DOI10.1016/j.jtbi.2016.08.013zbMath1352.92102OpenAlexW2518629531WikidataQ39493260 ScholiaQ39493260MaRDI QIDQ727146

Jeff Gaither, Laura S. Kubatko

Publication date: 6 December 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2016.08.013

zbMATH Keywords

random matrixcoalescent modelmultinomial distributionphylogenetic tree

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of graph theory (05C90) Random matrices (probabilistic aspects) (60B20)

Related Items (3)

Phylogenomic Models from Tree Symmetries ⋮ Evaluation of the relative performance of the subflattenings method for phylogenetic inference ⋮ Hypothesis testing near singularities and boundaries

Cites Work

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• The coalescent
• Patching up \(X\)-trees
• Weak convergence and empirical processes. With applications to statistics
• Phylogenetic ideals and varieties for the general Markov model
• Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
• ASYMPTOTIC DISTRIBUTIONS OF THE CANONICAL CORRELATIONS FROM CONTINGENCY TABLES

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