The jigsaw puzzle of sequence phenotype inference: piecing together Shannon entropy, importance sampling, and empirical Bayes

DOI10.1016/j.jtbi.2015.06.010zbMath1343.92322arXiv1312.4576OpenAlexW601481332WikidataQ33360963 ScholiaQ33360963MaRDI QIDQ739234

Vipul Periwal, Zeina Shreif, Deborah A. Striegel

Publication date: 18 August 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1312.4576

zbMATH Keywords

systems biologybinding motifsmodel inductionprotein binding microarraysquantitative sequence activity modelstranscription factor binding activity

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Measures of information, entropy (94A17) Genetics and epigenetics (92D10)

Uses Software

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Cites Work

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• A Mathematical Theory of Communication
• Univariate Discrete Distributions
• Simulating normalizing constants: From importance sampling to bridge sampling to path sampling

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