An improved model for whole genome phylogenetic analysis by Fourier transform

DOI10.1016/j.jtbi.2015.06.033zbMath1343.92327OpenAlexW806664756WikidataQ40761558 ScholiaQ40761558MaRDI QIDQ739329

Changchuan Yin, Stephen Shing-Toung Yau

Publication date: 18 August 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2015.06.033

zbMATH Keywords

Fourier transformphylogenetic analysisgenomeeven scalingsimilarity distance

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (3)

An estimator for local analysis of genome based on the minimal absent word ⋮ Use of image texture analysis to find DNA sequence similarities ⋮ Periodic power spectrum with applications in detection of latent periodicities in DNA sequences

Uses Software

• REPETITA

Cites Work

• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
• A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation

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