Building the library of RNA 3D nucleotide conformations using the clustering approach

DOI10.1515/amcs-2015-0050zbMath1322.62182OpenAlexW2293818823WikidataQ57387698 ScholiaQ57387698MaRDI QIDQ747556

Piotr Lukasiak, Martin Riedel, Jacek Błażewicz, Marta Szachniuk, Tomasz Zok, Maciej Antczak, David Nebel, Thomas Villmann

Publication date: 16 October 2015

Published in: International Journal of Applied Mathematics and Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/amcs-2015-0050

zbMATH Keywords

clusteringtorsion anglesconformer libraryneural gasRNA nucleotides

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Genetics and epigenetics (92D10)

Related Items (2)

Tabu search for the RNA partial degradation problem ⋮ New models and algorithms for RNA pseudoknot order assignment

Uses Software

• apcluster
• APCluster
• MCQ4Structures
• RNA FRABASE
• clusfind

Cites Work

• Clustering by Passing Messages Between Data Points
• MCQ4Structures to compute similarity of molecule structures
• Modeling, inference and optimization of regulatory networks based on time series data
• A statistical model of cluster stability
• Batch and median neural gas
• Divergence-Based Vector Quantization
• The Dissimilarity Representation for Pattern Recognition
• Finding Groups in Data
• Least squares quantization in PCM
• Regulation of p53 by siRNA in radiation treated cells: Simulation studies
• Center-based l1–clustering method
• Some operations research methods for analyzing protein sequences and structures
• Unnamed Item
• Unnamed Item

This page was built for publication: Building the library of RNA 3D nucleotide conformations using the clustering approach