Analysis of a data matrix and a graph: metagenomic data and the phylogenetic tree

DOI10.1214/10-AOAS402zbMath1234.62148arXiv1202.5880MaRDI QIDQ765971

Elizabeth Purdom

Publication date: 22 March 2012

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1202.5880

zbMATH Keywords

multivariate analysisprincipal components

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Graph theory (05C99)

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Uses Software

• R
• ade4
• sedaR

Cites Work

• Testing for phylogenetic signal in phenotypic traits: new matrices of phylogenetic proximities
• Diversity and dissimilarity coefficients: A unified approach
• Analysis of evolution: evolutionary rates, independence and treeness
• On distance matrices and Laplacians
• Principal component analysis.
• Laplacian eigenvectors of graphs. Perron-Frobenius and Faber-Krahn type theorems
• 10.1162/153244303768966085
• Multivariate data analysis: The French way
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