Statistics for phylogenetic trees

DOI10.1016/S0040-5809(02)00005-9zbMath1101.92305WikidataQ35016102 ScholiaQ35016102MaRDI QIDQ849456

Susan P. Holmes

Publication date: 31 October 2006

Published in: Theoretical Population Biology (Search for Journal in Brave)

zbMATH Keywords

bootstrapmaximum likelihoodparsimonyBayesian inferencephylogenetic treessufficiencyDNA-data

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

Related Items (7)

Distance metrics for ranked evolutionary trees ⋮ Tropical geometric variation of tree shapes ⋮ Limiting behaviour of Fréchet means in the space of phylogenetic trees ⋮ Relative Optimality Conditions and Algorithms for Treespace Fréchet Means ⋮ The Rise of Statistical Phylogenetics ⋮ Confidence Sets for Phylogenetic Trees ⋮ Polyhedral computational geometry for averaging metric phylogenetic trees

Uses Software

• PHYLIP
• SplitsTree

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Bagging predictors
• Some thoughts on empirical Bayes estimation
• Metric methods for analyzing partially ranked data
• Social choice and the topology of spaces of preferences
• A combinatorial description of the closest tree algorithm for finding evolutionary trees
• From the species problem to a general coverage problem via a new interpretation
• A generalization of spectral analysis with application to ranked data
• Inverting random functions
• Links between maximum likelihood and maximum parsimony under a simple model of site substitution
• Topological and discrete social choice: in a search of a theory
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• \(\Delta\) additive and \(\Delta\) ultra-additive maps, Gromov's trees, and the Farris transform
• Spectral analysis of phylogenetic data
• Random walks on trees and matchings
• NON-NULL RANKING MODELS. I
• Statistical Inference of Phylogenies
• Why Isn't Everyone a Bayesian?
• An empirical Bayes estimation problem
• Biological Sequence Analysis
• Matchings and phylogenetic trees
• A discrete Fourier analysis for evolutionary trees.
• Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
• Inverting Random Functions II: Explicit Bounds for Discrete Maximum Likelihood Estimation, with Applications
• Linear empirical Bayes estimation of means and variances.
• Bootstrap confidence levels for phylogenetic trees
• Analyzing and visualizing sequence and distance data using SPLITSTREE

This page was built for publication: Statistics for phylogenetic trees