Protein folding in the HP model on grid lattices with diagonals

DOI10.1016/j.dam.2006.04.031zbMath1104.92021OpenAlexW1965695344MaRDI QIDQ867863

Hans-Joachim Böckenhauer, Dirk Bongartz

Publication date: 19 February 2007

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2006.04.031

zbMATH Keywords

approximationcomputational biologyprotein foldingHP model

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Approximation Algorithms for Three Dimensional Protein Folding

Cites Work

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• On the intractability of protein folding with a finite alphabet of amino acids
• The algorithmics of folding proteins on lattices.
• Approximate protein folding in the HP side chain model on extended cubic lattices
• Opportunities for Combinatorial Optimization in Computational Biology
• Mathematical Foundations of Computer Science 2004
• LATIN 2004: Theoretical Informatics