Using the tangle: A consistent construction of phylogenetic distance matrices for quartets

DOI10.1016/j.mbs.2006.05.008zbMath1104.92049arXivq-bio/0510035OpenAlexW2158134433WikidataQ36563711 ScholiaQ36563711MaRDI QIDQ868196

Jeremy G. Sumner, Peter D. Jarvis

Publication date: 19 February 2007

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/q-bio/0510035

zbMATH Keywords

tanglephylogeneticsdistance methodslog det

Mathematics Subject Classification ID

Problems related to evolution (92D15) Continuous-time Markov processes on discrete state spaces (60J27) Computational methods for problems pertaining to biology (92-08)

Related Items

Binary cumulant varieties ⋮ The hyperdeterminant and triangulations of the 4-cube ⋮ ADVENTURES IN INVARIANT THEORY ⋮ Markov invariants, plethysms, and phylogenetics ⋮ Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics

Uses Software

• fastDNAml
• BIONJ

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Structuring causal trees
• Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.
• Reconstructing phylogenies from nucleotide pattern probabilities: A survey and some new results
• Distance measures in terms of substitution processes
• Recovering a tree from the leaf colourations it generates under a Markov model
• Entanglement invariants and phylogenetic branching
• Constructing Optimal Trees from Quartets
• Asynchronous Distance between Homologous DNA Sequences
• An intrinsic time for non-stationary finite markov chains