Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts

DOI10.1016/j.tpb.2019.11.005OpenAlexW3106004358WikidataQ91724004 ScholiaQ91724004MaRDI QIDQ86833

Venelin Mitov, Georgios Asimomitis, Krzysztof Bartoszek, Tanja Stadler, Venelin Mitov, Georgios Asimomitis, Tanja Stadler

Publication date: February 2020

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1809.09014

zbMATH Keywords

jumpsselectionLévy processpruningdriftpunctuated equilibrium

Mathematics Subject Classification ID

Biology and other natural sciences (92-XX)

Related Items (6)

Ancestral sequence reconstruction for co-evolutionary models ⋮ Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements ⋮ Efficient Bayesian inference of general Gaussian models on large phylogenetic trees ⋮ glinvci ⋮ Global multivariate model learning from hierarchically correlated data ⋮ A Central Limit Theorem for punctuated equilibrium

Uses Software

• R
• phytools
• GEIGER
• mvMORPH
• PCMBase
• diversitree
• Rphylopars
• ratematrix
• SPLITT

Cites Work

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• A phylogenetic comparative method for studying multivariate adaptation
• Assessing phenotypic correlation through the multivariate phylogenetic latent liability model
• On incomplete sampling under birth-death models and connections to the sampling-based coalescent
• Phenotypic evolution studied by layered stochastic differential equations
• Quantifying the effects of anagenetic and cladogenetic evolution
• Powers of tensors and fast matrix multiplication

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