Some string matching problems from bioinformatics which still need better solutions

DOI10.1016/S1570-8667(03)00062-5zbMath1114.92302MaRDI QIDQ876702

Gaston H. Gonnet

Publication date: 26 April 2007

Published in: Journal of Discrete Algorithms (Search for Journal in Brave)

zbMATH Keywords

pattern matchingalpha-helix predictionhomology detectionprobabilistic sequence matchingprobabilistic sequence searchingprofile searching

Mathematics Subject Classification ID

Nonnumerical algorithms (68W05) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

Fast profile matching algorithms - A survey

Uses Software

• ClustalW
• PROSITE

Cites Work

• Unnamed Item
• A fast string searching algorithm
• Fast Pattern Matching in Strings
• Probabilistic ancestral sequences and multiple alignments

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