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A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC)

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Publication:876713
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DOI10.1016/S1570-8667(03)00076-5zbMath1114.92025MaRDI QIDQ876713

Rolf Backofen

Publication date: 26 April 2007

Published in: Journal of Discrete Algorithms (Search for Journal in Brave)


zbMATH Keywords

branch-and-boundprotein foldinglattice proteinsHP-modelface-centered-cubic-lattice (FCC)


Mathematics Subject Classification ID

Polyhedral combinatorics, branch-and-bound, branch-and-cut (90C57) Dynamic programming (90C39) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)


Related Items (2)

A constraint-based approach to fast and exact structure prediction in three-dimensional protein models ⋮ Stochastic protein folding simulation in the three-dimensional HP-model



Cites Work

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  • The antipode construction for sphere packings




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