Dealing with repetitions in sequencing by hybridization

DOI10.1016/j.compbiolchem.2006.05.002zbMath1118.92028OpenAlexW2128065829WikidataQ48084990 ScholiaQ48084990MaRDI QIDQ883811

Aleksandra Swiercz, Wojciech T. Markiewicz, Fred Glover, Marta Kasprzak, Dietrich Rebholz-Schuhmann, Oguz, Ceyda, Jacek Błażewicz

Publication date: 12 June 2007

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2006.05.002

zbMATH Keywords

Genetic algorithmOligonucleotide librariesRepetitionsSequencing by hybridization

Mathematics Subject Classification ID

Approximation methods and heuristics in mathematical programming (90C59) Biochemistry, molecular biology (92C40)

Related Items (6)

Unified encoding for hyper-heuristics with application to bioinformatics ⋮ Tabu search algorithm for DNA sequencing by hybridization with multiplicity information available ⋮ A hyper-heuristic approach to sequencing by hybridization of DNA sequences ⋮ A hybrid algorithm for the DNA sequencing problem ⋮ DNA sequence assembly involving an acyclic graph model ⋮ Advancing Shannon entropy for measuring diversity in systems

Uses Software

• Tabu search

Cites Work

• Unnamed Item
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• Sequencing by hybridization with isothermic oligonucleotide libraries
• Tabu search for nonlinear and parametric optimization (with links to genetic algorithms)
• Complexity of DNA sequencing by hybridization.
• Hybrid genetic algorithm for DNA sequencing with errors
• On some properties of DNA graphs
• Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries
• DNA Sequencing—Tabu and Scatter Search Combined
• DNA Sequencing by Hybridization via Genetic Search

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