RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties

DOI10.1006/bulm.1998.0085zbMath1323.92149OpenAlexW2003004847WikidataQ51905520 ScholiaQ51905520MaRDI QIDQ886670

Christian Haslinger, Peter F. Stadler

Publication date: 27 October 2015

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc7197269

zbMATH Keywords

secondary structuresneutral mutationsbi-secondary structurespseudo-knots

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

Related Items (26)

Enumerative aspects of secondary structures ⋮ Algebraic dynamic programming for multiple context-free grammars ⋮ Local connectivity of neutral networks ⋮ Stack-number is not bounded by queue-number ⋮ Topological classification and enumeration of RNA structures by genus ⋮ Enumeration of symmetric arc diagrams ⋮ Combinatorics of RNA structures with pseudoknots ⋮ Combinatorics of locally optimal RNA secondary structures ⋮ Parameterized algorithms for book embedding problems ⋮ Parameterized Algorithms for Book Embedding Problems ⋮ Asymptotic enumeration of RNA structures with pseudoknots ⋮ Fatgraph models of RNA structure ⋮ On the page number of RNA secondary structures with pseudoknots ⋮ Logarithmic behavior of some combinatorial sequences ⋮ RNA pseudoknot structures with arc-length \(\geq 3\) and stack-length \(\geq \sigma \) ⋮ A new family of metrics for biopolymer contact structures ⋮ Reidys' and Stadler's metrics for RNA contact structures ⋮ Incompatibility networks as models of scale-free small-world graphs ⋮ Loop homology of bi-secondary structures ⋮ Neutral networks of sequence to shape maps ⋮ Moduli spaces and macromolecules ⋮ Random k -noncrossing RNA structures ⋮ Combinatorial design of pseudoknot RNA ⋮ On the decomposition of \(k\)-noncrossing RNA structures ⋮ Loop homology of bi-secondary structures. II ⋮ Fast Fourier transform for fitness landscapes

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