An integer programming model for protein structure prediction using the 3D-HP side chain model

DOI10.1016/j.dam.2015.06.021zbMath1336.92063OpenAlexW785937070MaRDI QIDQ897607

Heitor Silvério Lopes, Pablo Moscato, Lauro Cesar Galvão, Luiz Fernando Nunes, Regina E. Berretta

Publication date: 7 December 2015

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2015.06.021

zbMATH Keywords

integer programminglattice modelsbioinformaticsprotein folding

Mathematics Subject Classification ID

Integer programming (90C10) Protein sequences, DNA sequences (92D20)

Related Items (1)

Comparing Integer Linear Programming to SAT-Solving for Hard Problems in Computational and Systems Biology

Uses Software

• CPLEX

Cites Work

• Folding in lattice models with side chains
• Finding the lowest free energy conformation of a protein is an NP-hard problem: Proof and implications
• Complexity of protein folding
• Long proteins with unique optimal foldings in the H-P model

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