\texttt{TopKLists}: a comprehensive \texttt{R} package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists

DOI10.1515/sagmb-2014-0093zbMath1329.92008OpenAlexW2277647142WikidataQ40945786 ScholiaQ40945786MaRDI QIDQ906228

Vendula Švendová, Karl G. Kugler, Shili Lin, Michael G. Schimek, Jie Ding, Eva Budinská

Publication date: 21 January 2016

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2014-0093

zbMATH Keywords

TopKListsstochastic aggregationmicroRNA data

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to statistics (62-04) General biostatistics (92B15) Statistical ranking and selection procedures (62F07) Nonparametric inference (62G99) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (8)

A graph theoretical approach to data fusion ⋮ A novel method for estimating the common signals for consensus across multiple ranked lists ⋮ Weight set decomposition for weighted rank and rating aggregation: an interpretable and visual decision support tool ⋮ An Extended Mallows Model for Ranked Data Aggregation ⋮ Unnamed Item ⋮ Inferring a consensus problem list using penalized multistage models for ordered data ⋮ TopKLists ⋮ Bayesian analysis of rank data with covariates and heterogeneous rankers

Uses Software

• R
• CRAN
• gWidgets
• MADAM
• miRSystem
• samr
• DESeq2

Cites Work

• Space oriented rank-based data integration
• Integration of Ranked Lists via Cross Entropy Monte Carlo with Applications to mRNA and microRNA Studies
• An Inference and Integration Approach for the Consolidation of Ranked Lists
• Moderate-Deviation-Based Inference for Random Degeneration in Paired Rank Lists

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