Modeling protein-DNA complexes with tangles

DOI10.1016/J.CAMWA.2006.12.099zbMath1137.92011OpenAlexW1963972885MaRDI QIDQ929156

Isabel K. Darcy

Publication date: 12 June 2008

Published in: Computers \& Mathematics with Applications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.camwa.2006.12.099

zbMATH Keywords

unknotting numbertopoisomeraseDNA knotrecombinase

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Related Items (4)

Topological analysis of enzymatic actions on DNA polyhedral links ⋮ Algebraic and topological structures on rational tangles ⋮ Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex ⋮ Affine reflection groups for tiling applications: Knot theory and DNA

Uses Software

• TopoICE
• TangleSolve

Cites Work

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• Rational tangles
• Knoten mit zwei Brücken
• Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex
• A note on the tangle model for DNA recombination
• On the classification of rational tangles
• On the classification of rational knots
• Monopoles and lens space surgeries
• A calculus for rational tangles: applications to DNA recombination
• SOLVING UNORIENTED TANGLE EQUATIONS INVOLVING 4-PLATS
• Solving tangle equations arising in a DNA recombination model
• Tangle Equations II
• ON THE CLASSIFICATION OF RATIONAL 3-TANGLES
• Rational tangle distances on knots and links
• Dehn surgeries on strongly invertible knots which yield lens spaces
• BIOLOGICAL DISTANCES ON DNA KNOTS AND LINKS: Applications to XER recombination
• Tangle analysis of Gin site-specific recombination
• TANGLE EQUATIONS
• Tangle solutions for a family of DNA-rearranging proteins
• Knots
• Dehn surgery on knots

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