Computational methods in noncoding RNA research

DOI10.1007/s00285-007-0122-6zbMath1143.92010OpenAlexW2111741055WikidataQ36929494 ScholiaQ36929494MaRDI QIDQ938106

Ariane Machado-Lima, Hernando A. del Portillo, Alan Mitchell Durham

Publication date: 18 August 2008

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-007-0122-6

zbMATH Keywords

reviewgene findingstructure comparisonsecondary structure prediction

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

Editorial: ecological complex systems

Uses Software

• Rfam
• RNAshapes
• tRNAscan-SE
• Mfold
• Cofolga
• T-coffee
• snoSeeker
• ARAGORN
• CONTRAfold
• Pfold
• RSEARCH
• RNAKinetics
• Sfold
• ProMiR II
• PSoL
• MARNA
• ddbRNA

Cites Work

• Unnamed Item
• Alignment of trees -- an alternative to tree edit
• RNA secondary structure: a complete mathematical analysis
• Cofolga: a genetic algorithm for finding the common folding of two RNAs
• On Finding All Suboptimal Foldings of an RNA Molecule
• Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems
• Algorithms for Loop Matchings
• Research in Computational Molecular Biology

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