Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy

DOI10.1007/s00285-007-0137-zzbMath1144.92016OpenAlexW1599612900WikidataQ51903866 ScholiaQ51903866MaRDI QIDQ938112

Yann Ponty

Publication date: 18 August 2008

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-007-0137-z

zbMATH Keywords

RNA structurestatistical samplingBoltzmann free-energy ensembleMFE folding

Mathematics Subject Classification ID

Analysis of algorithms and problem complexity (68Q25) Statistical mechanics of polymers (82D60) Biochemistry, molecular biology (92C40) Random walks, random surfaces, lattice animals, etc. in equilibrium statistical mechanics (82B41) Asymptotic enumeration (05A16)

Related Items (2)

Topological language for RNA ⋮ RNA secondary structures with given motif specification: combinatorics and algorithms

Uses Software

• gfun
• Rfam
• RNAshapes
• GenRGenS
• Sfold
• DINAMelt

Cites Work

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• Investigation of the Bernoulli model for RNA secondary structures
• A new operation on sequences: The boustrophedon transform
• Singularity Analysis of Generating Functions
• GFUN

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