Variations on RNA folding and alignment: Lessons from Benasque

DOI10.1007/S00285-007-0107-5zbMath1211.90191OpenAlexW1975148447WikidataQ34646245 ScholiaQ34646245MaRDI QIDQ938116

Peter F. Stadler, Sebastian Will, Ivo L. Hofacker, Jana Hertel, Stephan H. Bernhart, Athanasius F. Bompfünewerer, Rolf Backofen

Publication date: 18 August 2008

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: http://ul.qucosa.de/id/qucosa%3A32162

zbMATH Keywords

dynamic programmingRNA foldingsecondary structure alignment

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Combinatorial optimization (90C27) Biochemistry, molecular biology (92C40)

Related Items (1)

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Uses Software

• RSEARCH
• Sfold

Cites Work

• RNA secondary structures and their prediction
• Minimal cycle bases of outerplanar graphs
• RNA secondary structure comparison: Exact analysis of the Zhang-Shasha tree edit algorithm.
• Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems

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