RNABC: Forward kinematics to reduce all-atom steric clashes in RNA backbone

DOI10.1007/s00285-007-0082-xzbMath1144.92003OpenAlexW2065996718WikidataQ42866758 ScholiaQ42866758MaRDI QIDQ938132

B. E. Eshmatov

Publication date: 18 August 2008

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc2153530

zbMATH Keywords

kinematic chainall-atom contactsautomated rebuildingRNA backbone adjustmentRNA backbone conformationRNA crystallographys-motifssteric clashstructure validation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Biophysics (92C05) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10) Software, source code, etc. for problems pertaining to biology (92-04)

Uses Software

• PHENIX
• RNABC
• Coot
• CNS

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