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A new approach to pattern matching in degenerate DNA/RNA sequences and distributed pattern matching

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Publication:942989
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DOI10.1007/s11786-007-0029-zzbMath1160.68684OpenAlexW2055119906MaRDI QIDQ942989

Costas S. Iliopoulos, M. Sohel Rahman, Laurent Mouchard

Publication date: 8 September 2008

Published in: Mathematics in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11786-007-0029-z

zbMATH Keywords

algorithmpattern matchingdegenerate stringsDNA/RNA sequences


Mathematics Subject Classification ID

Analysis of algorithms and problem complexity (68Q25) Nonnumerical algorithms (68W05) Pattern recognition, speech recognition (68T10)


Related Items

On-line string matching in highly similar DNA sequences, Indeterminate string factorizations and degenerate text transformations, An aperiodicity problem for multiwords, Subset Seed Automaton, Indexing a sequence for mapping reads with a single mismatch, Indeterminate string inference algorithms, Monge properties of sequence alignment, A new approach to regular \& indeterminate strings, IDPM: An Improved Degenerate Pattern Matching Algorithm for Biological Sequences, Computing regularities in strings: a survey, Efficient pattern matching in elastic-degenerate strings, Inferring an indeterminate string from a prefix graph



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