DNA recombination through assembly graphs

DOI10.1016/j.dam.2009.06.011zbMath1211.05171OpenAlexW2113328244MaRDI QIDQ967356

Nataša Jonoska, Angela Angeleska, Masahico Saito

Publication date: 28 April 2010

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2009.06.011

zbMATH Keywords

smoothingpolygonal pathassembly graphscilitesDNA rearrangementsrecombination processsimultaneous smoothingvirtual knot diagrams

Mathematics Subject Classification ID

Applications of graph theory (05C90) Relations of low-dimensional topology with graph theory (57M15) Genetics and epigenetics (92D10)

Related Items (11)

Transformations of assembly number for 4-regular graphs ⋮ Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax} ⋮ Graph of fuzzy topographic topological mapping in relation to \(k\)-Fibonacci sequence ⋮ Genus ranges of 4-regular rigid vertex graphs ⋮ Recombination faults in gene assembly in ciliates modeled using multimatroids ⋮ Topological analysis of enzymatic actions on DNA polyhedral links ⋮ Double occurrence words: their graphs and matrices ⋮ Four-regular graphs with rigid vertices associated to DNA recombination ⋮ Rewriting rule chains modeling DNA rearrangement pathways ⋮ Invariants of Graphs Modeling Nucleotide Rearrangements ⋮ Symbol Separation in Double Occurrence Words

Cites Work

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• Gene assembly through cyclic graph decomposition
• Computation in living cells. Gene assembly in ciliates
• Virtual knot theory
• RNA-guided DNA assembly
• A self-linking invariant of virtual knots
• From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates

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